PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g10990.1
Common NameLR48_Vigan09g159400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 140aa    MW: 15273.3 Da    PI: 6.2524
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g10990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.73.8e-103381755
             AP2 17 AeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    AeIrdp+    + + ++lg+f+tae A +a+++a+++l g
  Vang03g10990.1  3 AEIRDPY----KaAIVWLGNFDTAEAATRAYDEAALRLGG 38
                    9****76....35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.552146IPR001471AP2/ERF domain
SMARTSM003802.3E-9252IPR001471AP2/ERF domain
CDDcd000183.55E-18248No hitNo description
SuperFamilySSF541711.63E-11348IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-17347IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MGAEIRDPYK AAIVWLGNFD TAEAATRAYD EAALRLGGNR AKLNFPENVI PIHPPHLPNF  60
PATSLLGSGD VLAVTGEFHG LDQWFYDSQM VALQSSSSSL LSLLPAYAPS SASFPLFPSQ  120
LEKEDPPLYR VRNRKEKKT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-121AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143561.12e-42hypothetical protein PHAVU_007G082000g
RefseqXP_007143562.12e-42hypothetical protein PHAVU_007G082000g
TrEMBLA0A0L9VCZ46e-99A0A0L9VCZ4_PHAAN; Uncharacterized protein
STRINGGSMUA_Achr8P08000_0015e-19(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.13e-12ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]